{"id":201,"date":"2012-04-17T16:37:02","date_gmt":"2012-04-17T16:37:02","guid":{"rendered":"http:\/\/blogs.muohio.edu\/researchcomputing\/?page_id=201"},"modified":"2014-01-13T15:49:25","modified_gmt":"2014-01-13T15:49:25","slug":"interproscan","status":"publish","type":"page","link":"https:\/\/sites.miamioh.edu\/researchcomputing\/hpc-software\/interproscan\/","title":{"rendered":"InterProScan"},"content":{"rendered":"<p>InterProScan is a tool used to search for a genomic sequence in \u00a0multiple databases using multiple tools.<\/p>\n<p><strong>Website:<\/strong>\u00a0\u00a0<a href=\"http:\/\/www.ebi.ac.uk\/interpro\/\">http:\/\/www.ebi.ac.uk\/interpro\/<\/a><\/p>\n<p><strong>Installed versions: <\/strong>\u00a04.7 (databases no longer updated) and 4.8 (databases regularly updated &#8211; current data v 36.0)<\/p>\n<p><strong>Acknowledgement:<\/strong><strong>\u00a0<\/strong>Available &#8211; see\u00a0<a href=\"ftp:\/\/ftp.ebi.ac.uk\/pub\/software\/unix\/iprscan\/FAQs.html\">ftp:\/\/ftp.ebi.ac.uk\/pub\/software\/unix\/iprscan\/FAQs.html<\/a><\/p>\n<p><strong>Licensing:<\/strong>\u00a0 GNU GPL<\/p>\n<p><strong>Notes: \u00a0<\/strong>If you plan to use InterProScan with a large sample (1,000,000s) of sequences, please <a title=\"Contact\" href=\"http:\/\/sites.miamioh.edu\/researchcomputing\/contact\/\">contact the RCS group<\/a> first since large InterProScan jobs can consume significant cluster resources.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>InterProScan is a tool used to search for a genomic sequence in \u00a0multiple databases using multiple tools. Website:\u00a0\u00a0http:\/\/www.ebi.ac.uk\/interpro\/ Installed versions: \u00a04.7 (databases no longer updated) and 4.8 (databases regularly updated &#8211; current data v 36.0) Acknowledgement:\u00a0Available &#8211; see\u00a0ftp:\/\/ftp.ebi.ac.uk\/pub\/software\/unix\/iprscan\/FAQs.html Licensing:\u00a0 GNU GPL Notes: \u00a0If you plan to use InterProScan with a large sample (1,000,000s) of sequences, [&hellip;]<\/p>\n","protected":false},"author":22,"featured_media":0,"parent":36,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"_bbp_topic_count":0,"_bbp_reply_count":0,"_bbp_total_topic_count":0,"_bbp_total_reply_count":0,"_bbp_voice_count":0,"_bbp_anonymous_reply_count":0,"_bbp_topic_count_hidden":0,"_bbp_reply_count_hidden":0,"_bbp_forum_subforum_count":0,"footnotes":""},"class_list":["post-201","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.miamioh.edu\/researchcomputing\/wp-json\/wp\/v2\/pages\/201","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.miamioh.edu\/researchcomputing\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.miamioh.edu\/researchcomputing\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.miamioh.edu\/researchcomputing\/wp-json\/wp\/v2\/users\/22"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.miamioh.edu\/researchcomputing\/wp-json\/wp\/v2\/comments?post=201"}],"version-history":[{"count":4,"href":"https:\/\/sites.miamioh.edu\/researchcomputing\/wp-json\/wp\/v2\/pages\/201\/revisions"}],"predecessor-version":[{"id":242,"href":"https:\/\/sites.miamioh.edu\/researchcomputing\/wp-json\/wp\/v2\/pages\/201\/revisions\/242"}],"up":[{"embeddable":true,"href":"https:\/\/sites.miamioh.edu\/researchcomputing\/wp-json\/wp\/v2\/pages\/36"}],"wp:attachment":[{"href":"https:\/\/sites.miamioh.edu\/researchcomputing\/wp-json\/wp\/v2\/media?parent=201"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}