{"id":226,"date":"2023-04-17T14:41:24","date_gmt":"2023-04-17T18:41:24","guid":{"rendered":"https:\/\/sites.miamioh.edu\/lambda\/?page_id=226"},"modified":"2023-04-17T23:40:45","modified_gmt":"2023-04-18T03:40:45","slug":"rgenetics","status":"publish","type":"page","link":"https:\/\/sites.miamioh.edu\/lambda\/courses\/rgenetics\/","title":{"rendered":"R Genetics"},"content":{"rendered":"\n<div class=\"wp-block-getwid-section alignfull alignfull getwid-section-content-custom-width\"><div class=\"wp-block-getwid-section__wrapper getwid-padding-top-large getwid-padding-bottom-large getwid-padding-left-medium getwid-padding-right-medium\"><div class=\"wp-block-getwid-section__inner-wrapper\" style=\"max-width:1140px\"><div class=\"wp-block-getwid-section__background-holder\"><div class=\"wp-block-getwid-section__background\" style=\"background-image:url('https:\/\/cgw.motopress.com\/wp-content\/uploads\/2019\/11\/background-1.jpg')\"><div class=\"wp-block-getwid-section__background-image-wrapper\"><img decoding=\"async\" class=\"wp-block-getwid-section__background-image\" src=\"https:\/\/cgw.motopress.com\/wp-content\/uploads\/2019\/11\/background-1.jpg\" alt=\"\" \/><\/div><\/div><div class=\"wp-block-getwid-section__foreground\"><\/div><\/div><div class=\"wp-block-getwid-section__content\"><div class=\"wp-block-getwid-section__inner-content\">\n<div class=\"wp-block-columns has-2-columns are-vertically-aligned-center is-layout-flex wp-container-core-columns-is-layout-7387b849 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\">\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"683\" src=\"http:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/20220315_K11022_010-1024x683.jpg\" alt=\"Prof. Tereza Jezkova teaching evolution\" class=\"wp-image-88\" srcset=\"https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/20220315_K11022_010-1024x683.jpg 1024w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/20220315_K11022_010-300x200.jpg 300w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/20220315_K11022_010-768x512.jpg 768w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/20220315_K11022_010-1536x1025.jpg 1536w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/20220315_K11022_010-2048x1366.jpg 2048w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/20220315_K11022_010-360x240.jpg 360w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\">Dr. Tereza Jezkova teaching about species evolution and genetic diversity<\/figcaption><\/figure>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\">\n<div class=\"wp-block-getwid-section\" style=\"margin-top:0px\"><div class=\"wp-block-getwid-section__wrapper getwid-padding-top-none getwid-padding-bottom-none getwid-padding-left-medium getwid-padding-right-none getwid-padding-mobile-left-none\"><div class=\"wp-block-getwid-section__inner-wrapper\"><div class=\"wp-block-getwid-section__background-holder\"><div class=\"wp-block-getwid-section__background\"><\/div><div class=\"wp-block-getwid-section__foreground\"><\/div><\/div><div class=\"wp-block-getwid-section__content\"><div class=\"wp-block-getwid-section__inner-content\">\n<div class=\"wp-block-getwid-advanced-heading\" style=\"margin-bottom:30px;margin-top:10px\"><h2 class=\"wp-block-getwid-advanced-heading__content\">Learn to handle and analyze genetic data with R <img loading=\"lazy\" decoding=\"async\" width=\"724\" height=\"561\" class=\"wp-image-212\" style=\"width: 30px\" src=\"http:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo.png\" alt=\"R Logo\" srcset=\"https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo.png 724w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo-300x232.png 300w\" sizes=\"auto, (max-width: 724px) 100vw, 724px\" \/><\/h2><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Genetic data are represented by sequences of DNA bases (ATCG) that compose the genomes of all organisms. With this information, we are able to study the genetic composition of individuals, populations, species, and clades. We can determine how related two or more species are, what are the genetic boundaries of species, and how species have evolved through time and may evolve in the future. We can even assess the health of a population with genetic data. Genetic studies have many implications, from health (human or otherwise), pharmaceutics, forensics, agronomy, conservation, taxonomy, evolution, and many more. <\/p>\n\n\n\n<p class=\"wp-block-paragraph\">In this introductory 4-day course, we will introduce concepts related to DNA, how genetic data look like, what common formats are used to store genetic data, how to create phylogenetic trees and estimate parameters related to population health.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">For this purpose, we will use R, a free and common statistical software and programming language widely use as a tool in biology and other sciences. You will learn what R and Rstudio are, how to set up your computer to begin your work, how to read the data you need, and how to perform the tasks mentioned above.<\/p>\n<\/div><\/div><\/div><\/div><\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-7387b849 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:100%\">\n<div class=\"wp-block-group\"><div class=\"wp-block-group__inner-container is-layout-constrained wp-block-group-is-layout-constrained\">\n<div class=\"wp-block-buttons is-content-justification-center is-layout-flex wp-container-core-buttons-is-layout-3e41869c wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button\"><a class=\"wp-block-button__link wp-element-button\" href=\"https:\/\/sites.miamioh.edu\/lambda\/courses\/rspatial\/\"><img loading=\"lazy\" decoding=\"async\" width=\"724\" height=\"561\" class=\"wp-image-212\" style=\"width: 25px\" src=\"http:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo.png\" alt=\"\" srcset=\"https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo.png 724w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo-300x232.png 300w\" sizes=\"auto, (max-width: 724px) 100vw, 724px\" \/> Spatial<\/a><\/div>\n\n\n\n<div class=\"wp-block-button\"><a class=\"wp-block-button__link has-accent-background-color has-background has-text-align-center wp-element-button\"><img loading=\"lazy\" decoding=\"async\" width=\"724\" height=\"561\" class=\"wp-image-212\" style=\"width: 25px\" src=\"http:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo.png\" alt=\"\" srcset=\"https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo.png 724w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo-300x232.png 300w\" sizes=\"auto, (max-width: 724px) 100vw, 724px\" \/> Genetics<\/a><\/div>\n\n\n\n<div class=\"wp-block-button\"><a class=\"wp-block-button__link has-text-align-center wp-element-button\" href=\"https:\/\/sites.miamioh.edu\/lambda\/courses\/rdata\"><img loading=\"lazy\" decoding=\"async\" width=\"724\" height=\"561\" class=\"wp-image-212\" style=\"width: 25px\" src=\"http:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo.png\" alt=\"\" srcset=\"https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo.png 724w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Rlogo-300x232.png 300w\" sizes=\"auto, (max-width: 724px) 100vw, 724px\" \/> Data Analysis<\/a><\/div>\n\n\n\n<div class=\"wp-block-button\"><a class=\"wp-block-button__link has-text-align-center wp-element-button\" href=\"https:\/\/sites.miamioh.edu\/lambda\/courses\/pydata\"><img loading=\"lazy\" decoding=\"async\" width=\"1869\" height=\"2048\" class=\"wp-image-218\" style=\"width: 20px\" src=\"http:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Python-logo-notext.svg_.png\" alt=\"\" srcset=\"https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Python-logo-notext.svg_.png 1869w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Python-logo-notext.svg_-274x300.png 274w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Python-logo-notext.svg_-935x1024.png 935w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Python-logo-notext.svg_-768x842.png 768w, https:\/\/sites.miamioh.edu\/lambda\/files\/2023\/04\/Python-logo-notext.svg_-1402x1536.png 1402w\" sizes=\"auto, (max-width: 1869px) 100vw, 1869px\" \/> Data Analysis<\/a><\/div>\n<\/div>\n<\/div><\/div>\n<\/div>\n<\/div>\n<\/div><\/div><\/div><\/div><\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":3039,"featured_media":0,"parent":18,"menu_order":1,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_bbp_topic_count":0,"_bbp_reply_count":0,"_bbp_total_topic_count":0,"_bbp_total_reply_count":0,"_bbp_voice_count":0,"_bbp_anonymous_reply_count":0,"_bbp_topic_count_hidden":0,"_bbp_reply_count_hidden":0,"_bbp_forum_subforum_count":0,"footnotes":""},"class_list":["post-226","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.miamioh.edu\/lambda\/wp-json\/wp\/v2\/pages\/226","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.miamioh.edu\/lambda\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.miamioh.edu\/lambda\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.miamioh.edu\/lambda\/wp-json\/wp\/v2\/users\/3039"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.miamioh.edu\/lambda\/wp-json\/wp\/v2\/comments?post=226"}],"version-history":[{"count":0,"href":"https:\/\/sites.miamioh.edu\/lambda\/wp-json\/wp\/v2\/pages\/226\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/sites.miamioh.edu\/lambda\/wp-json\/wp\/v2\/pages\/18"}],"wp:attachment":[{"href":"https:\/\/sites.miamioh.edu\/lambda\/wp-json\/wp\/v2\/media?parent=226"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}